Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions

Boas Pucker; Iker Irisarri; Jan De Vries; Bo Xu

doi:10.1017/qpb.2021.18

Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions

Boas Pucker, Iker Irisarri, Jan De Vries, Bo Xu

Research output: Contribution to journal › Review article › peer-review

Original language	English
Article number	e5
Journal	Quantitative Plant Biology
Volume	3
DOIs	https://doi.org/10.1017/qpb.2021.18
Publication status	Published - Mar 11 2022
Externally published	Yes

ASJC Scopus Subject Areas

Plant Science

Keywords

Oxford Nanopore Technologies (ONT)
Pacific Biociences (PacBio)
haplophasing
long read sequencing
plant genome assembly
plant genomics

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10.1017/qpb.2021.18

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@article{7dfb94a21d6548bc8214fd3dc97d424e,

title = "Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions",

keywords = "Oxford Nanopore Technologies (ONT), Pacific Biociences (PacBio), haplophasing, long read sequencing, plant genome assembly, plant genomics",

author = "Boas Pucker and Iker Irisarri and {De Vries}, Jan and Bo Xu",

note = "Publisher Copyright: {\textcopyright} The Author(s), 2022. Published by Cambridge University Press in association with The John Innes Centre.",

year = "2022",

month = mar,

day = "11",

doi = "10.1017/qpb.2021.18",

language = "English",

volume = "3",

journal = "Quantitative Plant Biology",

issn = "2632-8828",

}

TY - JOUR

T1 - Plant genome sequence assembly in the era of long reads

T2 - Progress, challenges and future directions

AU - Pucker, Boas

AU - Irisarri, Iker

AU - De Vries, Jan

AU - Xu, Bo

N1 - Publisher Copyright: © The Author(s), 2022. Published by Cambridge University Press in association with The John Innes Centre.

PY - 2022/3/11

Y1 - 2022/3/11

KW - Oxford Nanopore Technologies (ONT)

KW - Pacific Biociences (PacBio)

KW - haplophasing

KW - long read sequencing

KW - plant genome assembly

KW - plant genomics

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U2 - 10.1017/qpb.2021.18

DO - 10.1017/qpb.2021.18

M3 - Review article

AN - SCOPUS:85138715512

SN - 2632-8828

VL - 3

JO - Quantitative Plant Biology

JF - Quantitative Plant Biology

M1 - e5

ER -

Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions

ASJC Scopus Subject Areas

Keywords

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Researchers' Work from University of Cambridge Focuses on Plant Biology (Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions)

Cite this

Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions

ASJC Scopus Subject Areas

Keywords

Access to Document

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Researchers' Work from University of Cambridge Focuses on Plant Biology (Plant genome sequence assembly in the era of long reads: Progress, challenges and future directions)

Cite this